Whoever said muffins aren't healthy has never tried these healthy banana protein muffins. Made with 100% whole grains, naturally sweetened and 9 grams of protein per muffin. The chocolate chips make them fun for the kids and I love they are getting whole grains and a boost in protein.
Along with my no-bake protein bars and gluten-free protein granola bars, we have been adding these to lunches and grabbing for a mid-afternoon snack.

Why You'll Love These Banana Protein Muffins
- 9 grams of protein - Yep, you read that right... these muffins have 9 grams of protein per muffin! My dairy-free & gluten-free waffles have 12 grams of protein per waffle, so be sure to try those, too!
- Whole grains - You won't find any refined flours here - these are made with just whole grain oat flour (try my easy oat flour chocolate chip cookies or healthy oat flour pancakes for more ways to use oat flour).
- Naturally sweetened - Just a little bit of pure maple syrup is all you need to naturally sweeten these banana protein muffins.
- Gluten free, dairy free, oil free - These muffins are full of healthy, real food ingredients, and are free from gluten, dairy, and oil.
- One bowl - Like my almond flour blackberry muffins, everything is mixed together in one bowl - less mess, less clean-up!
I've said it before, but muffins are one of my favorite things to food prep! They are great for breakfast and I just love putting them in my girls' lunches instead of a sandwich. It's much easier to control the ingredients that way, and I love that these banana protein muffins have more protein than a typical sandwich.
The older I get, the more I'm learning about the importance and benefits of protein. From preserving muscle mass and supporting bone health (me) and supporting immune system and keep you full (my girls), I'm always looking for ways to sneak in some more protein throughout the day.
If you want some more healthier protein recipes, you should try my protein granola bars, chocolate protein pancakes, protein overnight oats, or chocolate protein bread.
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Ingredient Notes

- Oat flour - I prefer to make my own oat flour, but you can use store bought as well. If you need these muffins to be gluten free, be sure to use certified gluten-free oat flour. While oats are naturally gluten free, they can become contaminated with gluten during processing, so if gluten sensitive, or celiac, make sure you use certified gluten free oat flour. I also recommend organic due to the high amount of glyphosate used on oats.
- Vanilla protein powder - I really like Just Ingredients vanilla protein, as it's a truly clean protein and doesn't have a weird texture or after taste. That said, you can use any vanilla, or even unflavored, protein powder.
- Peanut butter - Be sure to use natural peanut butter (ingredients should be just peanuts, or peanuts and salt) and make sure it's drippy and not the compact peanut butter from the bottom of the jar.
- Chocolate chips - I recommend chocolate chips that have no more than chocolate liquor/chocolate/cocoa powder, cane sugar, and cocoa butter. Brands that are Fair Trade certified and/or organic are even better! Equal Exchange and 365 Brand are great options.
A complete list of ingredients and amounts can be found in the recipe card below. The above are some specific notes to help with selecting ingredients.
Substitutions & Variations
- Chocolate chips. I love the added sweetness and flavor from the chocolate chips (and so do my girls), but these can easily be omitted if you don't want the added sugar.
- Dairy-free. For dairy-free banana protein muffins, use dairy-free chocolate chips. All other ingredients are naturally dairy-free.
- Add in some nuts. Walnuts or pecans would be a great choice.
- Nut free. This recipe does call for peanut butter, so if you're needing this recipe to be nut free, you can replace the peanut butter with a no-added sugar sun butter or melted coconut oil, avocado oil, or olive oil. Just know if you replace with oil, there will be less protein in these muffins.
- Vegan. I have not tested this, but you should easily be able to use flax eggs in place of the eggs (just know the protein content will be slightly less), use a vegan protein powder and dairy-free chocolate chips.
How to Make

Step 1: Whisk the mashed bananas, eggs, maple syrup, peanut butter, and vanilla together in a large mixing bowl.

Step 2: Add the oat flour, protein powder, baking powder, cinnamon, and salt to the wet ingredients. Mix until combined.

Step 3: Fold the chocolate chips into the muffin batter.

Step 4: Evenly divide batter between 9 prepared muffin cavities and bake at 350-degrees F for 14-16 minutes.
Sara's Tips for the Best banana protein Muffins
- Use previously frozen bananas. These provide more natural sweetness as well as moisture to these muffins. I always throw my brown bananas from the counter straight into the freezer so I have lots when it comes time for baking. You can thaw at room temp, or put on a microwave safe plate and microwave for 1-2 minutes to thaw. If you don't have previously frozen, use extra brown bananas from the counter.
- Use a quality, clean protein powder. Just Ingredients is one of my favorites, but I have heard good things about Sprout Living. A protein powder with a long ingredient list may make these too dense and dry, and I have not tested with any of these.
- Use room temperature eggs. For the best texture, eggs should be room temperature.
- For a pretty bakery style muffin, sprinkle some extra chocolate chips on top before baking.

What Type of Protein Powder Should I Use?
First off, I recommend you use a quality, clean protein powder. Just Ingredients is one of my favorites, but I have heard good things about Sprout Living. A protein powder with a long ingredient list may make these too dense and dry.
I use vanilla protein powder, but an unflavored protein powder would definitely work. Or even something flavored that would compliment these, such as peanut butter protein powder. I think both plant-based and whey protein powders work great.
Clean food tip: Whichever protein powder you use, look for one that is organic (to ensure there are no synthetic pesticides or GMO ingredients), is low in added sugars, doesn't have artificial flavors (or "natural flavors" if you can avoid it), and is free of soy protein concentrate or isolate. Most protein powders will have stevia leaf (okay if actually stevia "leaf") and/or artificial sweeteners such as erythritol (in minimal doses it's okay and make sure it's organic.)

How to Store
To store: Allow muffins to completely cool and then transfer to an air-tight storage container. They will stay fresh on the counter for 2-3 days, or store in the fridge for up to 5 days (and quickly heat in the microwave for 15-20 seconds to warm them back up).
To freeze: Place cooled muffins in a freezer safe container (Stasher bags are my favorite) and freeze for up to 3 months (my healthy carrot flaxseed muffins also freeze great). Allow to thaw at room temperature for a couple of hours, or place in the microwave in 30-second increments until warmed to your liking.
More Muffin Recipes to Try!
If you make this recipe, please let me know what you think! I would so appreciate you leaving a star rating and/or comment below. And don't forget to share a photo on Instagram or Facebook and mention @CleanPlateMama!
Eat Clean.Be Well!
-Sara

Banana Protein Muffins
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Equipment
- 1 Mixing bowl
- 1 muffin pan
Ingredients
- 1 cup mashed bananas (about 3 bananas)
- 2 eggs, room temperature
- ¼ cup drippy natural peanut butter
- ¼ cup pure maple syrup
- 1 tsp. pure vanilla extract
- 1 cup oat flour (certified gluten free if needed)
- ½ cup vanilla, or unflavored, protein powder
- 1 tsp. ground cinnamon
- 1 ½ tsp. baking powder
- ½ tsp. fine sea salt
- â…“ cup chocolate chips (optional)
Instructions
- Preheat oven to 350-degrees F and line a muffin tin with 9 muffin cups, or lightly grease 9 muffin cavities. Set muffin tin aside.
- To a large mixing bowl, add the mashed bananas, eggs, peanut butter, maple syrup, and vanilla. Whisk until evenly combined.
- Add the oat flour, protein powder, cinnamon, baking powder, and salt to the mashed banana mix. Mix until combined. If adding the chocolate chips, mix the chocolate chips into the batter.
- Evenly divide muffin the batter between the 9 prepared muffin cups. Batter should fill cups about ¾ of the way.
- Bake for 14-16 minutes, or until a toothpick entered in the center comes out clean. Allow muffins to cool slightly before removing from the pan.
- Enjoy!
Notes
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- For the best results, use previously frozen bananas. They provide more natural sweetness as well as moisture to these muffins.Â
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- For the best texture, use room temperature eggs (place them in a bowl of hot water for 10 minutes to quickly get to room temp).Â
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- I recommend you use a plant-based protein - whey protein may make these too dense and dry and I have only made these with a plant-based protein.Â




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